[formats] add nextflow_log

3 months ago · df29c7d0dd
parent 91a47dbd39
commit df29c7d0dd
3 changed files with 31 additions and 0 deletions
--- a/src/formats/formats.am
+++ b/src/formats/formats.am
@ -22,6 +22,7 @@ FORMAT_FILES = \
    $(srcdir)/%reldir%/journald_json_log.json \
    $(srcdir)/%reldir%/katello_log.json \
    $(srcdir)/%reldir%/nextcloud_log.json \
+    $(srcdir)/%reldir%/nextflow_log.json \
    $(srcdir)/%reldir%/openam_log.json \
    $(srcdir)/%reldir%/openamdb_log.json \
    $(srcdir)/%reldir%/openstack_log.json \
--- a/src/formats/nextflow_log.json
+++ b/src/formats/nextflow_log.json
@ -0,0 +1,29 @@
+{
+    "$schema": "https://lnav.org/schemas/format-v1.schema.json",
+    "nextflow_log": {
+        "description": "Format file for nextflow.io logs",
+        "url": [
+            "https://nextflow.io/docs/latest/cli.html#execution-logs"
+        ],
+        "regex": {
+            "std": {
+                "pattern": "(?<timestamp>\\w{3}-\\d{2} \\d{2}:\\d{2}:\\d{2}\\.\\d{3}) \\[(?<thread>[^\\]]+)\\] (?<level>[^ ]+)\\s+(?<module>[^ ]+) - (?<body>.*)"
+            }
+        },
+        "value": {
+            "module": {
+                "kind": "string",
+                "identifier": true
+            },
+            "thread": {
+                "kind": "string",
+                "identifier": true
+            }
+        },
+        "sample": [
+            {
+                "line": "Mar-18 21:41:15.684 [main] DEBUG nextflow.cli.Launcher - $> nextflow run nf-core/rnaseq -profile test,docker --outdir results"
+            }
+        ]
+    }
+}
--- a/src/time_formats.am
+++ b/src/time_formats.am
@ -59,6 +59,7 @@ TIME_FORMATS = \
    "%d %b %Y %H:%M:%S.%L" \
    "%d %b %Y %H:%M:%S,%L" \
    "%d %b %Y %H:%M" \
+    "%b-%d %H:%M:%S" \
    "%b %d %H:%M:%S" \
    "%b %d %k:%M:%S" \
    "%b %d %l:%M:%S" \